2V02

Recombinant vertebrate calmodulin complexed with Ba


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1440-50% MPD, PH4
Crystal Properties
Matthews coefficientSolvent content
2.3847.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 24.41α = 89.84
b = 29.32β = 85.68
c = 53.32γ = 82.8
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I911-2MAX III911-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.22094.10.0512.22.16993-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.395.70.098.12.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1UP52.220694534793.60.2460.2430.294RANDOM43.23
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.86-0.24-0.281.540.58-0.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.059
r_dihedral_angle_4_deg16.743
r_dihedral_angle_3_deg16.508
r_dihedral_angle_1_deg4.788
r_scangle_it1.473
r_angle_refined_deg0.964
r_scbond_it0.959
r_angle_other_deg0.81
r_mcangle_it0.739
r_mcbond_it0.423
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.059
r_dihedral_angle_4_deg16.743
r_dihedral_angle_3_deg16.508
r_dihedral_angle_1_deg4.788
r_scangle_it1.473
r_angle_refined_deg0.964
r_scbond_it0.959
r_angle_other_deg0.81
r_mcangle_it0.739
r_mcbond_it0.423
r_nbd_refined0.237
r_symmetry_vdw_refined0.192
r_symmetry_vdw_other0.182
r_nbtor_refined0.172
r_symmetry_hbond_refined0.167
r_nbd_other0.164
r_xyhbond_nbd_refined0.137
r_nbtor_other0.082
r_chiral_restr0.056
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1122
Nucleic Acid Atoms
Solvent Atoms8
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing