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Two-Carbon-Elongated HIV-1 Protease Inhibitors with a Tertiary- Alcohol-Containing Transition-State Mimic
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 0.7 M NACL, 100 MM MES PH5.0
Crystal Properties Matthews coefficient Solvent content 2.71 54.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.16 α = 90 b = 86.66 β = 90 c = 46.54 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 108 CCD MARRESEARCH 2006-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-5 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 15.76 86.9 0.06 8 4.2 293533
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 85.8 0.14 5.2 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.75 15.76 20030 1014 83 0.202 0.213 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.526 0.347 0.179
RMS Deviations Key Refinement Restraint Deviation r_angle_other_deg 3.63 r_angle_refined_deg 1.74 r_dihedral_angle_1_deg 1.33 r_nbd_refined 0.564 r_nbd_other 0.357 r_symmetry_vdw_other 0.245 r_nbtor_refined 0.215 r_chiral_restr 0.173 r_nbtor_other 0.143 r_symmetry_vdw_refined 0.119
RMS Deviations Key Refinement Restraint Deviation r_angle_other_deg 3.63 r_angle_refined_deg 1.74 r_dihedral_angle_1_deg 1.33 r_nbd_refined 0.564 r_nbd_other 0.357 r_symmetry_vdw_other 0.245 r_nbtor_refined 0.215 r_chiral_restr 0.173 r_nbtor_other 0.143 r_symmetry_vdw_refined 0.119 r_xyhbond_nbd_refined 0.07 r_symmetry_hbond_refined 0.046 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1516 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing