2UXI

Phloretin in complex with TtgR


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.50.2 M MGCL2, 0.1 M BIS-TRIS PH 6.5, 25% (V/V) PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.4850

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.221α = 90
b = 230.614β = 90
c = 43.942γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX10.1SRSPX10.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55092.90.0636.194.6151742
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.594.66.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.546.2714018115686.90.2490.2450.294RANDOM59.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.86-3.94-0.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.289
r_dihedral_angle_4_deg23.32
r_dihedral_angle_3_deg20.235
r_dihedral_angle_1_deg5.641
r_scangle_it3.491
r_scbond_it2.215
r_angle_refined_deg1.634
r_mcangle_it1.576
r_mcbond_it1.055
r_symmetry_hbond_refined0.703
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.289
r_dihedral_angle_4_deg23.32
r_dihedral_angle_3_deg20.235
r_dihedral_angle_1_deg5.641
r_scangle_it3.491
r_scbond_it2.215
r_angle_refined_deg1.634
r_mcangle_it1.576
r_mcbond_it1.055
r_symmetry_hbond_refined0.703
r_symmetry_vdw_refined0.366
r_nbtor_refined0.314
r_nbd_refined0.295
r_xyhbond_nbd_refined0.27
r_chiral_restr0.099
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3206
Nucleic Acid Atoms
Solvent Atoms149
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling