☰ Navigation Tabs
Structure of the oligomerisation domain of calcium-calmodulin dependent protein kinase II gamma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HKX PDB ENTRY 1HKX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.1 M SPG PH 7.0, 60% MPD
Crystal Properties Matthews coefficient Solvent content 2.64 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.954 α = 90 b = 158.363 β = 90 c = 103.941 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 39.7 78.2 0.06 11.4 2.63 29117
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.56 10.2 0.46 1.45 0.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HKX 2.46 39.68 27628 1467 78.4 0.186 0.184 0.1899 0.224 0.2302 RANDOM 34.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.54 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.556 r_dihedral_angle_4_deg 22.557 r_dihedral_angle_3_deg 16.891 r_scangle_it 9.668 r_scbond_it 6.985 r_dihedral_angle_1_deg 6.101 r_mcangle_it 4.416 r_mcbond_it 2.82 r_angle_refined_deg 1.25 r_angle_other_deg 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.556 r_dihedral_angle_4_deg 22.557 r_dihedral_angle_3_deg 16.891 r_scangle_it 9.668 r_scbond_it 6.985 r_dihedral_angle_1_deg 6.101 r_mcangle_it 4.416 r_mcbond_it 2.82 r_angle_refined_deg 1.25 r_angle_other_deg 0.91 r_nbd_refined 0.209 r_nbd_other 0.188 r_nbtor_refined 0.177 r_symmetry_vdw_other 0.173 r_xyhbond_nbd_refined 0.159 r_symmetry_vdw_refined 0.148 r_symmetry_hbond_refined 0.124 r_nbtor_other 0.085 r_chiral_restr 0.071 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6360 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing