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Inhibition of the HSP90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole, isoxazole amide analogs
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UY6 PDB ENTRY 1UY6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.9 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.297 α = 90 b = 88.683 β = 90 c = 99.701 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE OSMIC BLUE MIRRORS 2003-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.1 0.06 8 3.2 23194 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.12 89 0.3 3.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UY6 1.9 65.94 19470 1048 88.5 0.204 0.201 0.259 RANDOM 28.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.7 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_4_deg 18.504 r_dihedral_angle_3_deg 14.097 r_dihedral_angle_1_deg 6.301 r_scangle_it 3.341 r_scbond_it 2.319 r_angle_refined_deg 1.462 r_mcangle_it 1.443 r_mcbond_it 0.958 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.12 r_dihedral_angle_4_deg 18.504 r_dihedral_angle_3_deg 14.097 r_dihedral_angle_1_deg 6.301 r_scangle_it 3.341 r_scbond_it 2.319 r_angle_refined_deg 1.462 r_mcangle_it 1.443 r_mcbond_it 0.958 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.239 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1625 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling AMoRE phasing