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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THIADIAZOLE INHIBITOR PNU-141803
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1USN PROTEIN COMPONENT OF STROMELYSIN-1 MODEL WITH OTHER INHIBITOR (1USN)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 HANGING DROP VAPOR DIFFUSION., pH 7.0, vapor diffusion - hanging drop
Crystal Properties Matthews coefficient Solvent content 2.46 49.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.89 α = 90 b = 70.89 β = 90 c = 189.11 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR SIEMENS 1996-04-29 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 88 0.086 8 4.52 8566 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.33 77 0.192 4.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PROTEIN COMPONENT OF STROMELYSIN-1 MODEL WITH OTHER INHIBITOR (1USN) 2.2 10 2 8429 82 0.172 0.172 19.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.7 p_staggered_tor 10.1 p_planar_tor 3.2 p_scangle_it 1.998 p_scbond_it 1.33 p_mcangle_it 1.255 p_mcbond_it 0.748 p_chiral_restr 0.254 p_xyhbond_nbd 0.25 p_multtor_nbd 0.207
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.7 p_staggered_tor 10.1 p_planar_tor 3.2 p_scangle_it 1.998 p_scbond_it 1.33 p_mcangle_it 1.255 p_mcbond_it 0.748 p_chiral_restr 0.254 p_xyhbond_nbd 0.25 p_multtor_nbd 0.207 p_singtor_nbd 0.18 p_planar_d 0.035 p_angle_d 0.032 p_plane_restr 0.022 p_bond_d 0.015 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1312 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 34
Software Software Software Name Purpose X-PLOR model building PROFFT refinement X-PLOR refinement XENGEN data reduction XENGEN data scaling X-PLOR phasing