Solution structure of the a' domain of thermophilic fungal protein disulfide (oxidized form, 303K)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.1 mM [U-15N] PDI-1 | 90% H2O/10% D2O | 0.16 | 6.0 | ambient | 303 | |
| 2 | 3D 1H-15N NOESY | 0.1 mM [U-15N] PDI-1 | 90% H2O/10% D2O | 0.16 | 6.0 | ambient | 303 | |
| 3 | 2D 1H-13C HSQC aliphatic | 0.1 mM [U-13C; U-15N] PDI-2 | 100% D2O | 0.16 | 6.0 | ambient | 303 | |
| 4 | 2D 1H-13C HSQC aromatic | 0.1 mM [U-13C; U-15N] PDI-2 | 100% D2O | 0.16 | 6.0 | ambient | 303 | |
| 5 | 3D 1H-13C NOESY aliphatic | 0.1 mM [U-13C; U-15N] PDI-2 | 100% D2O | 0.16 | 6.0 | ambient | 303 | |
| 6 | 2D 1H-1H NOESY | 0.1 mM [U-13C; U-15N] PDI-2 | 100% D2O | 0.16 | 6.0 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| 2 | JEOL | ECA | 920 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DGSA-distance geometry simulated annealing | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 2 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 3 | chemical shift assignment | Sparky | 3.1 | Goddard |
| 4 | processing | XwinNMR | 2.6 | Bruker Biospin |
