☰ Navigation Tabs
The pure alternative state of ubiquitin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 20 mM [U-100% 2H] Tris(hydroxymethyl)aminomethane-1, 2 mM [U-100% 13C; U-100% 15N] ubiquitin-2, 0.2 mM DSS-3 88% H2O/12% D2O 20 7.2 250 0 298 2 2D 1H-13C HSQC aliphatic 20 mM [U-100% 2H] Tris(hydroxymethyl)aminomethane-1, 2 mM [U-100% 13C; U-100% 15N] ubiquitin-2, 0.2 mM DSS-3 88% H2O/12% D2O 20 7.2 250 0 298 3 2D 1H-13C HSQC aromatic 20 mM [U-100% 2H] Tris(hydroxymethyl)aminomethane-1, 2 mM [U-100% 13C; U-100% 15N] ubiquitin-2, 0.2 mM DSS-3 88% H2O/12% D2O 20 7.2 250 0 298 4 2D HNCO 20 mM [U-100% 2H] Tris(hydroxymethyl)aminomethane-1, 2 mM [U-100% 13C; U-100% 15N] ubiquitin-2, 0.2 mM DSS-3 88% H2O/12% D2O 20 7.2 250 0 298 5 3D 1H-13C/15N simultaneous evolutio NOESY HSQC 20 mM [U-100% 2H] Tris(hydroxymethyl)aminomethane-1, 2 mM [U-100% 13C; U-100% 15N] ubiquitin-2, 0.2 mM DSS-3 88% H2O/12% D2O 20 7.2 250 0 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, Energy minimization CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CYANA 3.93 Guntert, Mumenthaler and Wuthrich 2 refinement Amber 11 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking NMRView Johnson, One Moon Scientific 5 refinement CYANA_3.93