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Solution structure of oxidized human HMGB1 A box
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 0.5-0.6 mM [U-13C; U-15N] protein-1, 50 mM potassium phosphate-2, 10 % [U-2H] D2O-3, 150 mM potassium chloride-4 90% H2O/10% D2O 200 6.4 ambient 293 2 3D 1H-15N NOESY 0.5-0.6 mM [U-13C; U-15N] protein-1, 50 mM potassium phosphate-2, 10 % [U-2H] D2O-3, 150 mM potassium chloride-4 90% H2O/10% D2O 200 6.4 ambient 293 3 2D 1H-15N IPAP-HSQC 0.5-0.6 mM [U-13C; U-15N] protein-1, 50 mM potassium phosphate-2, 10 % [U-2H] D2O-3, 150 mM potassium chloride-4 90% H2O/10% D2O 200 6.4 ambient 293 4 2D 1H-15N IPAP-HSQC 0.5-0.6 mM [U-13C; U-15N] protein-5, 5 % C12E5/n-hexanol-6, 10 % U-2H D2O-7, 150 mM potassium chloride-8, 50 mM potassium phosphate-9 90% H2O/10% D2O 200 6.4 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis MAGRO Kobayashi N. 4 data analysis NMRView Johnson, One Moon Scientific 5 structure solution CYANA Guntert, Mumenthaler and Wuthrich 6 data analysis Sparky Goddard 7 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 8 refinement CYANA Guntert, Mumenthaler and Wuthrich 9 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore