2RSM | pdb_00002rsm

Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65 (ICT2)

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-13C NOESY	0.96 mM [U-13C; U-15N] entity-1, 20 mM [U-2H] TRIS-2, 100 mM sodium chloride-3, 1 mM [U-2H] DTT-4, 0.02 % sodium azide-5, 10 % [U-2H] D2O-6, 90 % H2O-7	90% H2O/10% D2O	120	7.0	1 atm	296
2	3D 1H-15N NOESY	0.96 mM [U-13C; U-15N] entity-1, 20 mM [U-2H] TRIS-2, 100 mM sodium chloride-3, 1 mM [U-2H] DTT-4, 0.02 % sodium azide-5, 10 % [U-2H] D2O-6, 90 % H2O-7	90% H2O/10% D2O	120	7.0	1 atm	296

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	900

NMR Refinement
Method	Details	Software
molecular dynamics		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	NMRView		Johnson, One Moon Scientific
4	data analysis	KUJIRA		Kobayashi, N.
5	chemical shift assignment	KUJIRA		Kobayashi, N.
6	structure solution	CYANA	2.0	Guntert, Mumenthaler and Wuthrich
7	refinement	OPAL		Luginbuhl, Guntert, Billeter and Wuthrich