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Solution structure of the bromodomain of human BRPF1 in complex with histone H4K5ac peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1.5 mM H4K5ac-1, 0.54 mM [U-99% 13C; U-99% 15N] Bromodomain-2 90% H2O/10% D2O 100 6.5 ambient 288 2 3D 1H-13C NOESY 1.5 mM H4K5ac-1, 0.54 mM [U-99% 13C; U-99% 15N] Bromodomain-2 90% H2O/10% D2O 100 6.5 ambient 288 3 13C-edited (F1) 1.5 mM H4K5ac-1, 0.54 mM [U-99% 13C; U-99% 15N] Bromodomain-2 90% H2O/10% D2O 100 6.5 ambient 288 4 13C/15N-filtered (F3) 3D NOESY 1.5 mM H4K5ac-1, 0.54 mM [U-99% 13C; U-99% 15N] Bromodomain-2 90% H2O/10% D2O 100 6.5 ambient 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800
NMR Refinement Method Details Software torsion angle dynamics, molecular dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 20100701 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 processing NMRView 5.0.4 Johnson, One Moon Scientific 3 data analysis KUJIRA 0.9905 Kobayashi, N. 4 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 5 refinement Amber 5 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 6 refinement CYANA