2RRA
Solution structure of RNA binding domain in human Tra2 beta protein in complex with RNA (GAAGAA)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] Human transformer 2 beta-1, 2 mM RNA (5'-R(GAAGAA)-3')-2 | 90% H2O/10% D2O | 100 | 7.0 | ambient | 283 | |
2 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] Human transformer 2 beta-1, 2 mM RNA (5'-R(GAAGAA)-3')-2 | 90% H2O/10% D2O | 100 | 7.0 | ambient | 283 | |
3 | 2D 1H-1H NOESY | 1 mM [U-100% 13C; U-100% 15N] Human transformer 2 beta-1, 2 mM RNA (5'-R(GAAGAA)-3')-2 | 90% H2O/10% D2O | 100 | 7.0 | ambient | 283 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 9 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm |
2 | collection | XwinNMR | 3.6 | Bruker Biospin |
3 | processing | NMRPipe | 20060801 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
4 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
5 | data analysis | KUJIRA | 0.9843 | N.Kobayashi |
6 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |