2RR6
Solution structure of the leucine rich repeat of human acidic leucine-rich nuclear phosphoprotein 32 family member B
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1.3mM [U-13C; U-15N] protein-1, 20mM [U-2H] TRIS-2, 100mM sodium chloride-3, 1mM [U-2H] DTT-4, 0.02 % sodium azide-5 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 296 | |
2 | 3D 1H-13C NOESY | 1.3mM [U-13C; U-15N] protein-1, 20mM [U-2H] TRIS-2, 100mM sodium chloride-3, 1mM [U-2H] DTT-4, 0.02 % sodium azide-5 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 296 | |
3 | 2D 1H-15N IPAP HSQC | 0.5mM [U-13C; U-15N] protein-6, 20mM [U-2H] TRIS-7, 100mM sodium chloride-8, 1mM [U-2H] DTT-9, 0.02 % sodium azide-10, 5 % C12E5/n-hexanol-11 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 296 | |
4 | 2D 1H-15N IPAP HSQC | 0.5mM [U-13C; U-15N] protein-12, 20mM [U-2H] TRIS-13, 100mM sodium chloride-14, 1mM [U-2H] DTT-15, 0.02 % sodium azide-16, 9 % polyacrylamide gel-17 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 296 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
2 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | collection | XwinNMR | Bruker Biospin | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | data analysis | KUJIRA | N. Kobayashi | |
6 | data analysis | NMRView | Johnson, One Moon Scientific |