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Solution structure of the leucine rich repeat of human acidic leucine-rich nuclear phosphoprotein 32 family member B
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1.3mM [U-13C; U-15N] protein-1, 20mM [U-2H] TRIS-2, 100mM sodium chloride-3, 1mM [U-2H] DTT-4, 0.02 % sodium azide-5 90% H2O/10% D2O 120 7.0 ambient 296 2 3D 1H-13C NOESY 1.3mM [U-13C; U-15N] protein-1, 20mM [U-2H] TRIS-2, 100mM sodium chloride-3, 1mM [U-2H] DTT-4, 0.02 % sodium azide-5 90% H2O/10% D2O 120 7.0 ambient 296 3 2D 1H-15N IPAP HSQC 0.5mM [U-13C; U-15N] protein-6, 20mM [U-2H] TRIS-7, 100mM sodium chloride-8, 1mM [U-2H] DTT-9, 0.02 % sodium azide-10, 5 % C12E5/n-hexanol-11 90% H2O/10% D2O 120 7.0 ambient 296 4 2D 1H-15N IPAP HSQC 0.5mM [U-13C; U-15N] protein-12, 20mM [U-2H] TRIS-13, 100mM sodium chloride-14, 1mM [U-2H] DTT-15, 0.02 % sodium azide-16, 9 % polyacrylamide gel-17 90% H2O/10% D2O 120 7.0 ambient 296
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 2 structure solution CYANA Guntert, Mumenthaler and Wuthrich 3 collection XwinNMR Bruker Biospin 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 data analysis KUJIRA N. Kobayashi 6 data analysis NMRView Johnson, One Moon Scientific