2RR3

Solution structure of the complex between human VAP-A MSP domain and human OSBP FFAT motif


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
23D HN(CA)CO1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
33D HNCACB1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
43D HN(COCA)CB1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
53D C(CO)NH1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
63D H(CCO)NH1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
73D HCCH-TOCSY1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
84D HC(CO)NH1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
92D 1H-1H NOESY1mM [U-15N] VAP-A MSP domain; 1mM [U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
103D 1H-15N TOCSY1mM [U-15N] VAP-A MSP domain; 1mM [U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
113D HNCO1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
123D HN(CA)CO1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
133D HNCACB1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
143D HN(COCA)CB1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
153D C(CO)NH1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
163D H(CCO)NH1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
173D HCCH-TOCSY1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
184D HC(CO)NH1mM VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
193D 1H-15N NOESY1mM [U-15N] VAP-A MSP domain; 1mM [U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
203D 1H-13C NOESY1mM [U-13C; U-15N] VAP-A MSP domain; 1mM [U-13C; U-15N] OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 100% D2O100% D2O6.9303
213D 13C-edited/13C-filtered NOESY1mM [U-13C; U-15N] VAP-A MSP domain; 1mM OSBP FFAT motif; 50mM potassium phosphate; 100mM potassium chloride; 1mM DTT; 0.1mM EDTA; 93% H2O/7% D2O93% H2O/7% D2O6.9303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
molecular dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number300
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisSparkyGoddard
3structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
4refinementAmber9Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm