2RQK

NMR Solution Structure of Mesoderm Development (MESD) - closed conformation


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1mM [U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
22D 1H-15N HSQC1mM [U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA100% D2O5.5ambient300
32D 1H-13C HSQC1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA100% D2O5.5ambient300
43D CBCA(CO)NH1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
53D CBCANNH1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
63D HNCO1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
73D HNCACO1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
83D HCCH-TOCSY1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA100% D2O5.5ambient300
93D HCCH-COSY1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA100% D2O5.5ambient300
103D H(CCCO)NH-TOCSY1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
113D (H)CC(CO)NH-TOCSY1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
123D 1H-15N NOESY1mM [U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
133D 1H-13C NOESY1mM [U-100% 13C; U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA100% D2O5.5ambient300
142D 1H-15N HSQC coupled1mM [U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
152D 1H-15N HSQC 15N_T1-edited1mM [U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
162D 1H-15N HSQC 15N_T2-edited1mM [U-100% 15N] MESD, 20mM sodium phosphate, 50mM sodium chloride, 0.02% sodium azide, 0.1mM EDTA90% H2O/10% D2O5.5ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAV900
2BrukerDRX600
3BrukerDMX750
NMR Refinement
MethodDetailsSoftware
simulated annealingXwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.5Bruker Biospin
2processingXwinNMR3.5Bruker Biospin
3chemical shift assignmentSparky3.10Goddard
4peak pickingSparky3.10Goddard
5collectionTopSpin2.0Bruker Biospin
6processingTopSpin2.0Bruker Biospin
7structure solutionCYANA2.0Guntert, Mumenthaler, Wuthrich
8structure solutionX-PLOR NIH2.14Schwieters, Kuszewski, Tjandra, Clore
9refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges, Read