2ROZ
Structure of the C-terminal PID Domain of Fe65L1 Complexed with the Cytoplasmic Tail of APP Reveals a Novel Peptide Binding Mode
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.37mM [U-13C; U-15N] Fe65L1 PID2, 0.37mM APP-derived 32-mer peptide | 90% H2O/10% D2O | 0.120 | 7.0 | ambient | 296 | |
2 | 3D 1H-13C NOESY | 0.37mM [U-13C; U-15N] Fe65L1 PID2, 0.37mM APP-derived 32-mer peptide | 90% H2O/10% D2O | 0.120 | 7.0 | ambient | 296 | |
3 | 3D_13C,15N F1-FILTERED 13C F3-EDITED NOESY | 0.37mM [U-13C; U-15N] Fe65L1 PID2, 0.37mM APP-derived 32-mer peptide | 90% H2O/10% D2O | 0.120 | 7.0 | ambient | 296 | |
4 | 3D_13C,15N F1-FILTERED 15N F3-EDITED NOESY | 0.37mM [U-13C; U-15N] Fe65L1 PID2, 0.37mM APP-derived 32-mer peptide | 90% H2O/10% D2O | 0.120 | 7.0 | ambient | 296 | |
5 | 2D_F2 13C,15N- FILTERED NOESY | 0.37mM [U-13C; U-15N] Fe65L1 PID2, 0.37mM APP-derived 32-mer peptide | 90% H2O/10% D2O | 0.120 | 7.0 | ambient | 296 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Additional NMR Experimental Information | |
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Details | The experiments of the conventional NOESY spectra, 3D 1H-15N NOESY and 3D 1H-13C NOESY, are conducted at 900 MHZ BRUKER AVANCE machine. However, the other three filter-related experiments, 3D_13C,15N F1-FILTERED 13C F3-EDITED NOESY, 3D_13C,15N F1-FILTERED 15N F3-EDITED NOESY, and 2D_F2 13C,15N- FILTERED NOESY, are conducted at 800 MHZ BRUKER AVANCE machine. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker |
2 | processing | NMRPipe | 20031121 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
4 | data analysis | KUJIRA | 0.9820 | Kobayashi, N. |
5 | structure solution | CYANA | 1.0.8 | Herrmann, Guntert and Wuthrich |
6 | refinement | CYANA | 1.0.8 | Herrmann, Guntert and Wuthrich |