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Solution structure of the SHP-1 C-terminal SH2 domain complexed with a tyrosine-phosphorylated peptide from NKG2A
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 0.8mM [U-13C; U-15N] SHP-1 C-terminal SH2 domain; 0.8mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O 90% H2O/10% D2O 120 7.4 ambient 2 3D 1H-13C NOESY 0.8mM [U-13C; U-15N] SHP-1 C-terminal SH2 domain; 0.8mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O 90% H2O/10% D2O 120 7.4 ambient 3 3D F1-15N,13C-filtered 15N-separated NOESY 0.8mM [U-13C; U-15N] SHP-1 C-terminal SH2 domain; 0.8mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O 90% H2O/10% D2O 120 7.4 ambient 4 3D F1-15N,13C-filtered 13C-separated NOESY 0.8mM [U-13C; U-15N] SHP-1 C-terminal SH2 domain; 0.8mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O 90% H2O/10% D2O 120 7.4 ambient 5 2D F2-15N,13C-filtered NOESY 0.8mM [U-13C; U-15N] SHP-1 C-terminal SH2 domain; 0.8mM tyrosine-phosphorylated peptide; 20mM [U-2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 1mM [U-2H] DTT; 90% H2O/10% D2O 90% H2O/10% D2O 120 7.4 ambient
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.6 Bruker Biospin 2 processing NMRPipe 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRView 5.0.4 Johnson, One Moon Scientific 4 peak picking NMRView 5.0.4 Johnson, One Moon Scientific 5 chemical shift assignment NMRView 5.0.4 Johnson, One Moon Scientific 6 data analysis KUJIRA 0.9810 Kobayashi, N. 7 peak picking KUJIRA 0.9810 Kobayashi, N. 8 chemical shift assignment KUJIRA 0.9810 Kobayashi, N. 9 structure solution CYANA 2.0.17 Guntert, Mumenthaler and Wuthrich 10 refinement CYANA 2.0.17 Guntert, Mumenthaler and Wuthrich