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The solution structure of phototactic transducer protein HtrII linker region from Natronomonas pharaonis
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 2 3D HNCACB 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 3 3D HNCA 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 4 3D HNCO 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 5 3D HN(COCA)CB 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 6 3D H(CCO)NH 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 7 3D 1H-15N NOESY 0.6-0.8mM [U-15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 8 3D 1H-15N TOCSY 0.6-0.8mM [U-15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 9 3D H(CA)CONH 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 10 3D HCCH-TOCSY 0.6-0.8mM [U-100% 13C; U-100% 15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277 11 2D 1H-1H NOESY 0.6-0.8mM [U-15N] pHtrII(100-159), 10mM citric acid, 50mM potassium chloride 90% H2O/10% D2O 0.05 5.0 ambient 277
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 800
NMR Refinement Method Details Software molecular dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CYANA 2.1 Guntert, Mumenthaler and Wuthrich 2 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 collection of dihedral angles TALOS Cornilescu, Delaglio and Bax 4 refinement Amber 9.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Koll 5 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 peak picking Sparky Goddard 7 chemical shift assignment Sparky Goddard 8 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax