2RLP

NMR structure of CCP modules 1-2 of complement factor H


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
22D 1H-13C HSQC1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
33D CBCA(CO)NH1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
43D C(CO)NH1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
53D HNCO1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
63D HNCACO1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
73D HBHA(CO)NH1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
83D 1H-13C NOESY1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
93D 1H-15N NOESY1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
103D HCCH-TOCSY1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
113D H(CCO)NH1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
123D CBCANH1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
133D HBHANH1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
142D 1H-15N HSQC-IPAP-HN1mM [U-95% 13C; U-95% 15N] FactorH CCP1-2, 10mM potassium phosphate, 12mg/mL Pf1 phage, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
152D 1H-15N HSQC-IPAP-HN1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
162D 1H-15N HSQC-IPAP-CAHA1mM [U-95% 13C; U-95% 15N] FactorH CCP1-2, 10mM potassium phosphate, 12mg/mL Pf1 phage, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
172D 1H-15N HSQC-IPAP-CAHA1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
182D 1H-15N HNCO-IPAP-CACO1mM [U-95% 13C; U-95% 15N] FactorH CCP1-2, 10mM potassium phosphate, 12mg/mL Pf1 phage, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
192D 1H-15N HNCO-IPAP-CACO1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
202D 1H-15N HSQC1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu100% D2O6.2ambient310
212D HBCBCGCDHD1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
222D HBCBCGCDCEHE1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
232D 1H-13C HSQC-CT aromatics1mM FactorH CCP1-2, 10mM potassium phosphate, 50mM L-Arg, 50mM L-Glu90% H2O/10% D2O6.2ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
molecular dynamics, simulated annealingwith simulated annealingAnalysis
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number30
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisAnalysis1.0CCPN
2peak pickingAnalysis1.0CCPN
3chemical shift assignmentAnalysis1.0CCPN
4chemical shift calculationAnalysis1.0CCPN
5processingAzara2.7Boucher
6structure solutionCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
7refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
8structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
9noe assignmentCYANA2.1Guntert, Mumenthaler and Wuthrich
10collectionXwinNMR3.6Bruker Biospin