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NMR structure of the antimicrobial peptide RP-1 bound to SDS micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.5mM [U-15N] protein, 0.4mM DSS, 150mM [U-99% 2H] SDS, 0.4mM sodium azide 90% H2O/10% D2O 5 ambient 313 2 2D 1H-1H TOCSY 1.5mM [U-15N] protein, 0.4mM DSS, 150mM [U-99% 2H] SDS, 0.4mM sodium azide 90% H2O/10% D2O 5 ambient 313 3 2D 1H-1H NOESY 1.5mM [U-15N] protein, 0.4mM DSS, 150mM [U-99% 2H] SDS, 0.4mM sodium azide 90% H2O/10% D2O 5 ambient 313
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR Bruker Biospin 2 data analysis Sparky 3.110 Goddard 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read