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Crystal Structure of S.cerevisiae Vta1 C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 MPD, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.72 54.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.42 α = 90 b = 50.707 β = 90 c = 74.353 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD 2006-07-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9793, 0.9794, 0.9566 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 94.2 0.062 16.9 4 59057
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 91.1 0.202 3.1 5605
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 50 57918 2928 92.48 0.222 0.22 0.2187 0.249 0.2449 RANDOM 19.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.96 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.534 r_dihedral_angle_3_deg 13.59 r_dihedral_angle_4_deg 10.614 r_scangle_it 3.618 r_dihedral_angle_1_deg 3.541 r_scbond_it 2.308 r_angle_refined_deg 1.24 r_mcangle_it 1.234 r_mcbond_it 0.771 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.534 r_dihedral_angle_3_deg 13.59 r_dihedral_angle_4_deg 10.614 r_scangle_it 3.618 r_dihedral_angle_1_deg 3.541 r_scbond_it 2.308 r_angle_refined_deg 1.24 r_mcangle_it 1.234 r_mcbond_it 0.771 r_nbtor_refined 0.3 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.215 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.064 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2474 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction