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Crystal structure of a putative monooxygenase (YP_001095275.1) from Shewanella loihica PV-4 at 1.26 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 40.0% 1,2-propanediol, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.87 34.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.931 α = 90 b = 63.155 β = 90 c = 27.283 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537, 0.9797, 0.9795 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 26.528 63.3 0.059 0.059 6.5 3.2 14880
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.26 1.29 3.1 1.314 1.314 0.7 1 52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.26 26.528 14848 742 63.01 0.141 0.14 0.1385 0.162 0.1547 RANDOM 10.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.65 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.926 r_dihedral_angle_4_deg 16.783 r_dihedral_angle_3_deg 13.404 r_sphericity_free 8.418 r_dihedral_angle_1_deg 5.392 r_scangle_it 4.38 r_scbond_it 3.386 r_sphericity_bonded 3.36 r_rigid_bond_restr 2.186 r_mcangle_it 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.926 r_dihedral_angle_4_deg 16.783 r_dihedral_angle_3_deg 13.404 r_sphericity_free 8.418 r_dihedral_angle_1_deg 5.392 r_scangle_it 4.38 r_scbond_it 3.386 r_sphericity_bonded 3.36 r_rigid_bond_restr 2.186 r_mcangle_it 2.18 r_mcbond_it 1.775 r_angle_refined_deg 1.599 r_angle_other_deg 0.962 r_mcbond_other 0.663 r_symmetry_vdw_other 0.33 r_symmetry_vdw_refined 0.298 r_nbd_refined 0.216 r_nbd_other 0.198 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.166 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.106 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 748 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELXD phasing SHARP phasing