X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7293Unbuffered low-salt concentration using PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4149.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.692α = 110.64
b = 68.325β = 91.9
c = 95.597γ = 108.94
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMAR scanner 345 mm plate2006-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5417

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.73090.380.141.83152431524
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.893.40.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1G08, Bovine carbonmonoxy hemoglobin2.722.53152426018286390.460.233710.225440.30815RANDOM41.781
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.01-0.02-0.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.379
r_dihedral_angle_3_deg23.116
r_dihedral_angle_4_deg21.513
r_dihedral_angle_1_deg8.583
r_scangle_it2.707
r_scbond_it1.885
r_angle_refined_deg1.818
r_mcangle_it1.163
r_mcbond_it0.806
r_symmetry_vdw_refined0.369
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.379
r_dihedral_angle_3_deg23.116
r_dihedral_angle_4_deg21.513
r_dihedral_angle_1_deg8.583
r_scangle_it2.707
r_scbond_it1.885
r_angle_refined_deg1.818
r_mcangle_it1.163
r_mcbond_it0.806
r_symmetry_vdw_refined0.369
r_nbtor_refined0.32
r_nbd_refined0.292
r_symmetry_hbond_refined0.226
r_xyhbond_nbd_refined0.225
r_metal_ion_refined0.224
r_chiral_restr0.111
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8600
Nucleic Acid Atoms
Solvent Atoms51
Heterogen Atoms344

Software

Software
Software NamePurpose
REFMACrefinement
MAR345dtbdata collection
AUTOMARdata reduction
MOLREPphasing