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PheRS from Staphylococcus haemolyticus- rational protein engineering and inhibitor studies
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 18% PEG3350, 0.4M sodium formate, 0.1M Bis-Tris propane, pH 6.5, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 54.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 249.312 α = 90 b = 87.602 β = 100.44 c = 61.072 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Si monochromator 2006-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 35.6 95.7 0.05 12.91 3.6 62893 62893 38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.3 76.1 0.42 2.16 2.8 6217
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 35.6 62889 3192 95.66 0.2 0.196 0.2016 0.269 0.27 RANDOM 45.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.66 -0.73 2.91 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.084 r_dihedral_angle_4_deg 21.831 r_dihedral_angle_3_deg 20.078 r_dihedral_angle_1_deg 11.734 r_scangle_it 8.515 r_scbond_it 6.486 r_mcangle_it 4.339 r_mcbond_it 3.528 r_angle_refined_deg 1.571 r_mcbond_other 1.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.084 r_dihedral_angle_4_deg 21.831 r_dihedral_angle_3_deg 20.078 r_dihedral_angle_1_deg 11.734 r_scangle_it 8.515 r_scbond_it 6.486 r_mcangle_it 4.339 r_mcbond_it 3.528 r_angle_refined_deg 1.571 r_mcbond_other 1.033 r_angle_other_deg 0.745 r_symmetry_vdw_other 0.298 r_symmetry_hbond_refined 0.289 r_nbd_other 0.246 r_xyhbond_nbd_refined 0.239 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.228 r_nbtor_refined 0.193 r_xyhbond_nbd_other 0.171 r_chiral_restr 0.109 r_nbtor_other 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8335 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing