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Crystal structure of plasmid pTiC58 VirC2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.4 48.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.374 α = 90 b = 57.374 β = 90 c = 33.935 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 315
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979602 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115872 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 96.9 0.062 0.049 18.6 3.3 13804 13376 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 96.9 0.62 0.049 18.6 3.3 13804
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 30 13368 678 96.95 0.184 0.183 0.1815 0.209 0.204 RANDOM 27.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.21 0.42 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.658 r_dihedral_angle_4_deg 19.422 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_1_deg 4.499 r_scangle_it 2.68 r_scbond_it 1.678 r_mcangle_it 1.124 r_angle_refined_deg 1.07 r_mcbond_it 0.668 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.658 r_dihedral_angle_4_deg 19.422 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_1_deg 4.499 r_scangle_it 2.68 r_scbond_it 1.678 r_mcangle_it 1.124 r_angle_refined_deg 1.07 r_mcbond_it 0.668 r_nbtor_refined 0.301 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 945 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction