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Crystal Structure of Lhx3 LIM domains 1 and 2 with the binding domain of Isl1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Vapour diffusion, Hanging drop 7.25 298 1.0M tri-sodium citrate, 0.1M Tris, HCl pH 7.25, Vapour diffusion, Hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.59 52.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.494 α = 90 b = 62.218 β = 91.61 c = 51.885 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 59.76 96.4 0.051 13.4 23120
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 78.8 0.388 1855
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.05 40 23109 1188 96.53 0.214 0.211 0.2235 0.254 0.2562 RANDOM 43.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 -1.34 4.26 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.223 r_dihedral_angle_4_deg 21.198 r_dihedral_angle_3_deg 18.923 r_dihedral_angle_1_deg 7.861 r_scangle_it 3.598 r_scbond_it 2.55 r_angle_refined_deg 1.919 r_mcangle_it 1.729 r_mcbond_it 1.083 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.223 r_dihedral_angle_4_deg 21.198 r_dihedral_angle_3_deg 18.923 r_dihedral_angle_1_deg 7.861 r_scangle_it 3.598 r_scbond_it 2.55 r_angle_refined_deg 1.919 r_mcangle_it 1.729 r_mcbond_it 1.083 r_nbtor_refined 0.308 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.222 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.168 r_chiral_restr 0.134 r_metal_ion_refined 0.073 r_bond_refined_d 0.02 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2369 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction