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Crystral Structure of the nucleoporin Nic96
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 3-10% PEG3350, 0.1M BisTris pH6.5, 0.05M lithium sulfate, 3% 1,6-hexandiole, 0.01mM DTE, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.77 67.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62 α = 62 b = 100 β = 82 c = 104 γ = 86
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9792 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 97.3 25.64 4.4 64618 -10 -10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 97.1 3.89 4694
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 19.78 62199 62199 3313 97.75 0.23 0.227 0.225 0.285 0.2788 RANDOM 51.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 1.7 -1.09 4.7 0.36 -2.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.573 r_dihedral_angle_3_deg 21.894 r_dihedral_angle_4_deg 18.79 r_dihedral_angle_1_deg 8.874 r_scangle_it 1.947 r_angle_refined_deg 1.694 r_scbond_it 1.227 r_mcangle_it 1.008 r_mcbond_it 0.571 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.573 r_dihedral_angle_3_deg 21.894 r_dihedral_angle_4_deg 18.79 r_dihedral_angle_1_deg 8.874 r_scangle_it 1.947 r_angle_refined_deg 1.694 r_scbond_it 1.227 r_mcangle_it 1.008 r_mcbond_it 0.571 r_nbtor_refined 0.318 r_symmetry_hbond_refined 0.267 r_nbd_refined 0.258 r_symmetry_vdw_refined 0.251 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.126 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9896 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling SOLVE phasing