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Crystal Structure of PtlH with Fe/oxalylglycine bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 7.5 282 100mM HEPES, 200mM MgCl2, 20% PEG 3350, pH 7.5, sitting drop, temperature 282K
Crystal Properties Matthews coefficient Solvent content 2.19 43.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.769 α = 90 b = 70.564 β = 113.17 c = 48.023 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-12-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 98.5 0.076 8.1 2.5 30519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.524 2.4 3064
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 27.57 30496 1537 98.25 0.176 0.174 0.1729 0.217 0.2169 RANDOM 17.102
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.24 -0.11 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.592 r_dihedral_angle_4_deg 17.87 r_dihedral_angle_3_deg 12.174 r_dihedral_angle_1_deg 5.663 r_scangle_it 2.69 r_scbond_it 1.728 r_angle_refined_deg 1.191 r_mcangle_it 0.975 r_mcbond_it 0.63 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.592 r_dihedral_angle_4_deg 17.87 r_dihedral_angle_3_deg 12.174 r_dihedral_angle_1_deg 5.663 r_scangle_it 2.69 r_scbond_it 1.728 r_angle_refined_deg 1.191 r_mcangle_it 0.975 r_mcbond_it 0.63 r_nbtor_refined 0.304 r_xyhbond_nbd_refined 0.29 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.154 r_chiral_restr 0.082 r_metal_ion_refined 0.04 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2123 Nucleic Acid Atoms Solvent Atoms 448 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling COMO phasing REFMAC refinement PDB_EXTRACT data extraction