☰ Navigation Tabs
Crystal Structure of PtlH with AKG and ent-1PL bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 8.5 282 100mM Tris, 200mM MgCl2, 20% PEG 3350, pH 8.5, sitting drop, temperature 282K
Crystal Properties Matthews coefficient Solvent content 2.28 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.499 α = 90 b = 70.106 β = 92.49 c = 48.725 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2006-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9795 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 30 99.5 0.052 12.2 3.2 63775
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 99.5 0.446 3.1 12632
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.35 30 63775 3226 99.53 0.173 0.172 0.1703 0.196 0.1946 RANDOM 14.798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.02 -0.2 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.803 r_dihedral_angle_4_deg 15.461 r_dihedral_angle_3_deg 11.57 r_dihedral_angle_1_deg 5.828 r_scangle_it 2.399 r_scbond_it 1.669 r_angle_refined_deg 1.173 r_mcangle_it 1.042 r_mcbond_it 0.644 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.803 r_dihedral_angle_4_deg 15.461 r_dihedral_angle_3_deg 11.57 r_dihedral_angle_1_deg 5.828 r_scangle_it 2.399 r_scbond_it 1.669 r_angle_refined_deg 1.173 r_mcangle_it 1.042 r_mcbond_it 0.644 r_nbtor_refined 0.304 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.173 r_symmetry_vdw_refined 0.166 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2201 Nucleic Acid Atoms Solvent Atoms 530 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction