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CRYSTAL STRUCTURE OF A PUTATIVE LIPID BINDING PROTEIN (GSU0061) FROM GEOBACTER SULFURREDUCENS PCA AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.07 277 NANODROP, 28.6% 2-Methyl-2,4-pentanediol, 0.2M Lithium sulfate, 0.1M MES pH 6.07, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.97 37.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.19 α = 90 b = 116.25 β = 90 c = 97.31 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0000, 0.9797, 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.05 99 0.042 12.31 26165 -3 25.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 95.3 0.644 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.05 26140 1328 99.56 0.194 0.193 0.224 0.2207 RANDOM 27.278
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -2.02 2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.852 r_dihedral_angle_4_deg 14.704 r_dihedral_angle_3_deg 14.587 r_scangle_it 8.144 r_scbond_it 5.932 r_dihedral_angle_1_deg 5.21 r_mcangle_it 3.6 r_mcbond_it 2.648 r_angle_refined_deg 1.405 r_angle_other_deg 0.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.852 r_dihedral_angle_4_deg 14.704 r_dihedral_angle_3_deg 14.587 r_scangle_it 8.144 r_scbond_it 5.932 r_dihedral_angle_1_deg 5.21 r_mcangle_it 3.6 r_mcbond_it 2.648 r_angle_refined_deg 1.405 r_angle_other_deg 0.979 r_mcbond_other 0.592 r_symmetry_vdw_other 0.301 r_nbd_refined 0.224 r_nbd_other 0.189 r_nbtor_refined 0.184 r_symmetry_hbond_refined 0.18 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.09 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2104 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing autoSHARP phasing