☰ Navigation Tabs
DFP modified DegS delta PDZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 50 MM NA CACODYLATE PH 6.5, 100 MM NA CITRATE, 20% ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 47.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.531 α = 90 b = 132.745 β = 90 c = 231.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C .97949 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 97.6 0.07 8.9 6.4 90170
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 97.2 0.401 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 37.22 80387 4127 91.01 0.19633 0.19432 0.23635 0.2309 RANDOM 37.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.27 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.572 r_dihedral_angle_3_deg 13.473 r_dihedral_angle_4_deg 12.434 r_dihedral_angle_1_deg 5.474 r_scangle_it 3.891 r_mcangle_it 3.414 r_scbond_it 2.724 r_mcbond_it 2.203 r_angle_refined_deg 1.115 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.572 r_dihedral_angle_3_deg 13.473 r_dihedral_angle_4_deg 12.434 r_dihedral_angle_1_deg 5.474 r_scangle_it 3.891 r_mcangle_it 3.414 r_scbond_it 2.724 r_mcbond_it 2.203 r_angle_refined_deg 1.115 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.188 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13877 Nucleic Acid Atoms Solvent Atoms 679 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection