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3-methylbenzylazide in complex with T4 lysozyme L99A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.76 55.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.24 α = 90 b = 60.24 β = 90 c = 96.837 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115872 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.463 52.2 99.8 0.093 12.4 6.1 35646 35646
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.463 1.52 99.1 0.348 4.4 3485
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.463 52.2 35586 35586 1789 99.51 0.181 0.181 0.18 0.1756 0.213 0.2114 RANDOM 16.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.19 0.39 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.237 r_dihedral_angle_3_deg 11.608 r_dihedral_angle_4_deg 11.311 r_dihedral_angle_1_deg 4.53 r_sphericity_free 2.803 r_scangle_it 2.734 r_scbond_it 2.526 r_rigid_bond_restr 2.28 r_sphericity_bonded 2.161 r_angle_refined_deg 1.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.237 r_dihedral_angle_3_deg 11.608 r_dihedral_angle_4_deg 11.311 r_dihedral_angle_1_deg 4.53 r_sphericity_free 2.803 r_scangle_it 2.734 r_scbond_it 2.526 r_rigid_bond_restr 2.28 r_sphericity_bonded 2.161 r_angle_refined_deg 1.083 r_mcangle_it 1.075 r_mcbond_it 0.87 r_nbd_refined 0.337 r_nbtor_refined 0.318 r_symmetry_hbond_refined 0.151 r_symmetry_vdw_refined 0.125 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.064 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1315 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 26
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection REFMAC phasing