2R9Z

Glutathione amide reductase from Chromatium gracile


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.9458.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.933α = 90
b = 71.933β = 90
c = 223.854γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.9073EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.12062670

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTE.coli gluthione reductase, PDB entry 1GET2.119.965949431761000.19940.196950.24626RANDOM29.934
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.650.65-1.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.354
r_dihedral_angle_4_deg19.944
r_dihedral_angle_3_deg17.171
r_dihedral_angle_1_deg6.417
r_scangle_it2.938
r_scbond_it1.922
r_angle_refined_deg1.533
r_mcangle_it1.13
r_mcbond_it0.676
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.354
r_dihedral_angle_4_deg19.944
r_dihedral_angle_3_deg17.171
r_dihedral_angle_1_deg6.417
r_scangle_it2.938
r_scbond_it1.922
r_angle_refined_deg1.533
r_mcangle_it1.13
r_mcbond_it0.676
r_nbtor_refined0.308
r_symmetry_hbond_refined0.278
r_symmetry_vdw_refined0.218
r_nbd_refined0.207
r_xyhbond_nbd_refined0.168
r_chiral_restr0.11
r_bond_refined_d0.013
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6672
Nucleic Acid Atoms
Solvent Atoms449
Heterogen Atoms118

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing