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Crystal structure of gene product RHA04853 from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 0.1M Na(OAC), 0.2M Ammonium acetate, 30% PEG 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.09 41.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.411 α = 90 b = 89.048 β = 94.09 c = 58.913 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 58.72 98.72 0.072 32.3 9.5 80327 79299 2 16.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.538 88.54 0.343 2.85 7 5882
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 58.72 79299 79299 4173 98.72 0.17786 0.17786 0.17614 0.1841 0.21076 0.2169 RANDOM 16.334
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.01 -0.3 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.39 r_dihedral_angle_4_deg 17.29 r_dihedral_angle_3_deg 12.323 r_dihedral_angle_1_deg 7.404 r_scangle_it 3.487 r_scbond_it 2.567 r_angle_refined_deg 1.55 r_mcangle_it 1.518 r_mcbond_it 1.458 r_angle_other_deg 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.39 r_dihedral_angle_4_deg 17.29 r_dihedral_angle_3_deg 12.323 r_dihedral_angle_1_deg 7.404 r_scangle_it 3.487 r_scbond_it 2.567 r_angle_refined_deg 1.55 r_mcangle_it 1.518 r_mcbond_it 1.458 r_angle_other_deg 0.91 r_mcbond_other 0.237 r_symmetry_vdw_other 0.235 r_nbd_refined 0.231 r_nbd_other 0.22 r_symmetry_vdw_refined 0.207 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.178 r_symmetry_hbond_refined 0.151 r_nbtor_other 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3875 Nucleic Acid Atoms Solvent Atoms 667 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing