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Structure of human CLIC2, crystal form B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K0M PDB ENTRY 1K0M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 30%-32% PEG 400, 100mM Tris-HCl, pH7.5, 5mM GSH, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.84 33.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.973 α = 90 b = 66.94 β = 99.86 c = 44.071 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Xenocs 2007-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 20.7 97.7 0.047 24.2 6 17172 17172 33.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.95 84.3 0.315 2.4 5.3 2053
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1K0M 1.86 20.65 17172 869 99.49 0.201 0.18617 0.18396 0.1911 0.22764 0.2346 RANDOM 18.992
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 0.32 -0.13 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.415 r_dihedral_angle_3_deg 13.159 r_dihedral_angle_4_deg 12.147 r_dihedral_angle_1_deg 6.8 r_scangle_it 1.713 r_scbond_it 1.177 r_angle_refined_deg 1.065 r_angle_other_deg 0.848 r_mcangle_it 0.721 r_mcbond_it 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.415 r_dihedral_angle_3_deg 13.159 r_dihedral_angle_4_deg 12.147 r_dihedral_angle_1_deg 6.8 r_scangle_it 1.713 r_scbond_it 1.177 r_angle_refined_deg 1.065 r_angle_other_deg 0.848 r_mcangle_it 0.721 r_mcbond_it 0.63 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.192 r_nbd_other 0.18 r_symmetry_vdw_other 0.178 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.119 r_nbtor_other 0.083 r_mcbond_other 0.081 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1961 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction SCALA data scaling PHASER phasing