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CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (CHU_1428) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.60 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 NANODROP, 5.0% Glycerol, 19.0% Isopropanol, 19.0% PEG 4000, 0.1M Citrate pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 47.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.83 α = 90 b = 57.69 β = 90 c = 157.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97926, 0.97904 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 28.843 89.2 0.036 14.02 67050 26.306
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 82.3 0.346 2.3 11455
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 28.843 66987 3377 96.64 0.176 0.176 0.175 0.1801 0.199 0.2004 RANDOM 16.686
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -0.4 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.933 r_dihedral_angle_3_deg 10.608 r_dihedral_angle_4_deg 9.118 r_scangle_it 6.029 r_dihedral_angle_1_deg 4.707 r_scbond_it 4.593 r_mcangle_it 2.754 r_mcbond_it 1.907 r_angle_refined_deg 1.775 r_angle_other_deg 1.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.933 r_dihedral_angle_3_deg 10.608 r_dihedral_angle_4_deg 9.118 r_scangle_it 6.029 r_dihedral_angle_1_deg 4.707 r_scbond_it 4.593 r_mcangle_it 2.754 r_mcbond_it 1.907 r_angle_refined_deg 1.775 r_angle_other_deg 1.367 r_mcbond_other 0.511 r_symmetry_vdw_other 0.209 r_nbd_refined 0.191 r_nbd_other 0.166 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.14 r_symmetry_vdw_refined 0.125 r_chiral_restr 0.099 r_nbtor_other 0.085 r_xyhbond_nbd_other 0.033 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3752 Nucleic Acid Atoms Solvent Atoms 430 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing