X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.7293Sodium Citrate, Acetone, Rubidium Chloride, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0439.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.522α = 90
b = 80.522β = 90
c = 38.329γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATEMAR scanner 345 mm plate2007-03-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.045070.30.242.21.341694169
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.042.11520.650.81.2311

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1TRZ2.0825.79285732857.260.24310.237040.29842RANDOM46.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.360.180.36-0.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.628
r_dihedral_angle_3_deg31.236
r_dihedral_angle_4_deg27.014
r_dihedral_angle_1_deg24.222
r_scangle_it11.239
r_scbond_it8.095
r_angle_refined_deg7.67
r_mcangle_it5.553
r_mcbond_it3.08
r_symmetry_vdw_refined0.665
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.628
r_dihedral_angle_3_deg31.236
r_dihedral_angle_4_deg27.014
r_dihedral_angle_1_deg24.222
r_scangle_it11.239
r_scbond_it8.095
r_angle_refined_deg7.67
r_mcangle_it5.553
r_mcbond_it3.08
r_symmetry_vdw_refined0.665
r_chiral_restr0.501
r_nbd_refined0.481
r_nbtor_refined0.459
r_xyhbond_nbd_refined0.429
r_symmetry_hbond_refined0.406
r_bond_refined_d0.108
r_gen_planes_refined0.027
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms800
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
AUTOMARdata reduction
AMoREphasing