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Crystal structure of RB human arg-insulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TRZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 293 Sodium Citrate, Acetone, Rubidium Chloride, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.522 α = 90 b = 80.522 β = 90 c = 38.329 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2007-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 50 70.3 0.24 2.2 1.3 4169 4169
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.04 2.11 52 0.65 0.8 1.2 311
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1TRZ 2.08 25.79 2857 328 57.26 0.2431 0.23704 0.3617 0.29842 0.3667 RANDOM 46.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.18 0.36 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.628 r_dihedral_angle_3_deg 31.236 r_dihedral_angle_4_deg 27.014 r_dihedral_angle_1_deg 24.222 r_scangle_it 11.239 r_scbond_it 8.095 r_angle_refined_deg 7.67 r_mcangle_it 5.553 r_mcbond_it 3.08 r_symmetry_vdw_refined 0.665
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.628 r_dihedral_angle_3_deg 31.236 r_dihedral_angle_4_deg 27.014 r_dihedral_angle_1_deg 24.222 r_scangle_it 11.239 r_scbond_it 8.095 r_angle_refined_deg 7.67 r_mcangle_it 5.553 r_mcbond_it 3.08 r_symmetry_vdw_refined 0.665 r_chiral_restr 0.501 r_nbd_refined 0.481 r_nbtor_refined 0.459 r_xyhbond_nbd_refined 0.429 r_symmetry_hbond_refined 0.406 r_bond_refined_d 0.108 r_gen_planes_refined 0.027 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 800 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement AUTOMAR data reduction AMoRE phasing