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Crystal structure of MN human arg-insulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TRZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 293 Sodium Citrate, Ammonium Sulphate, Magnesium Chloride, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.687 α = 90 b = 80.687 β = 90 c = 37.517 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2007-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 96.3 0.15 3.3 4.9 4331 4331
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.29 95.3 0.59 1 4.9 233
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1TRZ 2.25 40.36 3914 402 99.75 0.193 0.186 0.1917 0.264 0.1905 RANDOM 35.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.735 r_dihedral_angle_1_deg 17.372 r_dihedral_angle_4_deg 16.8 r_dihedral_angle_3_deg 16.502 r_scangle_it 7.349 r_scbond_it 5.867 r_mcangle_it 3.456 r_mcbond_it 2.76 r_angle_refined_deg 2.611 r_symmetry_hbond_refined 0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.735 r_dihedral_angle_1_deg 17.372 r_dihedral_angle_4_deg 16.8 r_dihedral_angle_3_deg 16.502 r_scangle_it 7.349 r_scbond_it 5.867 r_mcangle_it 3.456 r_mcbond_it 2.76 r_angle_refined_deg 2.611 r_symmetry_hbond_refined 0.387 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.299 r_nbd_refined 0.233 r_chiral_restr 0.2 r_xyhbond_nbd_refined 0.179 r_symmetry_metal_ion_refined 0.081 r_metal_ion_refined 0.078 r_bond_refined_d 0.037 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 803 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement AUTOMAR data reduction AMoRE phasing