X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8300PEG 4000, ethelyene glycol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties
Matthews coefficientSolvent content
2.5551.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.8α = 90
b = 81.3β = 90
c = 132.35γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS2007-05-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1219.970.06810.94.1533258
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.070.2184.54.15

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT22033218169297.180.2170.2150.262RANDOM22.808
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.75-0.88-0.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.489
r_dihedral_angle_4_deg17.505
r_dihedral_angle_3_deg14.525
r_dihedral_angle_1_deg7.09
r_scangle_it3.672
r_scbond_it2.733
r_mcangle_it1.728
r_angle_refined_deg1.705
r_mcbond_it1.109
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.489
r_dihedral_angle_4_deg17.505
r_dihedral_angle_3_deg14.525
r_dihedral_angle_1_deg7.09
r_scangle_it3.672
r_scbond_it2.733
r_mcangle_it1.728
r_angle_refined_deg1.705
r_mcbond_it1.109
r_nbtor_refined0.303
r_symmetry_metal_ion_refined0.221
r_nbd_refined0.202
r_symmetry_vdw_refined0.193
r_symmetry_hbond_refined0.169
r_xyhbond_nbd_refined0.151
r_chiral_restr0.111
r_metal_ion_refined0.065
r_bond_refined_d0.02
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3355
Nucleic Acid Atoms
Solvent Atoms268
Heterogen Atoms22

Software

Software
Software NamePurpose
d*TREKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction