2R1I

Crystal structure of putative acetyltransferase (YP_831484.1) from Arthrobacter sp. FB24 at 1.65 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5277NANODROP, 15.0% Glycerol, 8.5% Isopropanol, 17.0% PEG 4000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.6553.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 144.1α = 90
b = 40.26β = 123.39
c = 81.27γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2007-07-01MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.91837, 0.97929, 0.97905SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6527.74689.70.02713.074639231.781
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.7178.70.3831.97328

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.6527.74646391235498.020.1750.1750.1740.206RANDOM24.404
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.08-0.940.35-0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.958
r_dihedral_angle_4_deg16.236
r_dihedral_angle_3_deg11.916
r_dihedral_angle_1_deg6.839
r_scangle_it6.603
r_scbond_it4.879
r_mcangle_it2.887
r_mcbond_it2.1
r_angle_refined_deg1.615
r_angle_other_deg0.972
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.958
r_dihedral_angle_4_deg16.236
r_dihedral_angle_3_deg11.916
r_dihedral_angle_1_deg6.839
r_scangle_it6.603
r_scbond_it4.879
r_mcangle_it2.887
r_mcbond_it2.1
r_angle_refined_deg1.615
r_angle_other_deg0.972
r_mcbond_other0.547
r_symmetry_vdw_other0.294
r_symmetry_vdw_refined0.224
r_nbd_refined0.218
r_nbd_other0.211
r_nbtor_refined0.175
r_xyhbond_nbd_refined0.154
r_symmetry_hbond_refined0.138
r_chiral_restr0.093
r_nbtor_other0.086
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2345
Nucleic Acid Atoms
Solvent Atoms301
Heterogen Atoms65

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
XSCALEdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata reduction
SHELXDphasing
autoSHARPphasing