X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.329820% PEG 4K, 0.1 M BisTris , pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1743.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.063α = 90
b = 62.998β = 92.2
c = 77.016γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDMARMOSAIC 225 mm CCD2007-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D0.97893APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.976.942904

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.976.9242596213298.60.1720.170.22RANDOM20.883
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.4-0.91-2.11.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.851
r_dihedral_angle_4_deg16.415
r_dihedral_angle_3_deg15.243
r_dihedral_angle_1_deg5.095
r_scangle_it2.691
r_scbond_it1.866
r_angle_refined_deg1.408
r_mcangle_it1.043
r_mcbond_it0.728
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.851
r_dihedral_angle_4_deg16.415
r_dihedral_angle_3_deg15.243
r_dihedral_angle_1_deg5.095
r_scangle_it2.691
r_scbond_it1.866
r_angle_refined_deg1.408
r_mcangle_it1.043
r_mcbond_it0.728
r_nbtor_refined0.304
r_nbd_refined0.211
r_symmetry_vdw_refined0.179
r_xyhbond_nbd_refined0.148
r_symmetry_hbond_refined0.139
r_chiral_restr0.092
r_bond_refined_d0.016
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4496
Nucleic Acid Atoms
Solvent Atoms352
Heterogen Atoms192

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing