2R0W

PFA2 FAB complexed with Abeta1-8


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.329525% PEG-MME 5000, 0.1 M OAc, pH 5.3, VAPOR DIFFUSION, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.1943.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.793α = 92.51
b = 43.327β = 94.96
c = 58.456γ = 90.55
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.542.64960.071101.913814
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5989.80.4731.81281

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.50342.641380069595.770.2110.2080.277RANDOM39.705
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.140.350.07-0.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.969
r_dihedral_angle_3_deg16.408
r_dihedral_angle_4_deg14.995
r_dihedral_angle_1_deg6.974
r_scangle_it2.258
r_angle_refined_deg1.573
r_scbond_it1.436
r_mcangle_it1.01
r_angle_other_deg0.843
r_mcbond_it0.548
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.969
r_dihedral_angle_3_deg16.408
r_dihedral_angle_4_deg14.995
r_dihedral_angle_1_deg6.974
r_scangle_it2.258
r_angle_refined_deg1.573
r_scbond_it1.436
r_mcangle_it1.01
r_angle_other_deg0.843
r_mcbond_it0.548
r_symmetry_hbond_refined0.248
r_symmetry_vdw_other0.242
r_nbd_refined0.208
r_nbd_other0.194
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.168
r_symmetry_vdw_refined0.142
r_mcbond_other0.109
r_nbtor_other0.091
r_chiral_restr0.083
r_xyhbond_nbd_other0.033
r_bond_refined_d0.016
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3417
Nucleic Acid Atoms
Solvent Atoms63
Heterogen Atoms1

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction