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Crystal Structure of ALIX/AIP1 in complex with the YPDL Late Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 286 0.20-0.25 M MgCl2, 7-10% PEG 4000, 0.1 M NaMES, pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 286K
Crystal Properties Matthews coefficient Solvent content 3.18 61.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.383 α = 90 b = 98.57 β = 107.07 c = 72.799 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97946 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 50 98.2 0.15 16.7 3 29646
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.59 2.69 96.5 0.306 2.6 2888
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.59 50 29643 1488 96.14 0.226 0.223 0.2191 0.286 0.2829 RANDOM 57.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.15 -5.23 -0.21 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.309 r_dihedral_angle_3_deg 20.704 r_dihedral_angle_4_deg 17.099 r_dihedral_angle_1_deg 5.763 r_scangle_it 2.388 r_scbond_it 1.48 r_angle_refined_deg 1.384 r_mcangle_it 1.026 r_mcbond_it 0.595 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.309 r_dihedral_angle_3_deg 20.704 r_dihedral_angle_4_deg 17.099 r_dihedral_angle_1_deg 5.763 r_scangle_it 2.388 r_scbond_it 1.48 r_angle_refined_deg 1.384 r_mcangle_it 1.026 r_mcbond_it 0.595 r_nbtor_refined 0.304 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.099 r_symmetry_hbond_refined 0.094 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5552 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction