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CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (TM1040_1390) FROM SILICIBACTER SP. TM1040 AT 2.15 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 NANODROP, 0.16M (NH4)2SO4, 20.0% Glycerol, 20.0% PEG 4000, 0.1M Acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.43 49.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.307 α = 90 b = 95.307 β = 90 c = 132.634 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97916 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 28.228 100 0.146 0.146 4.2 7.4 38522
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 100 1.024 1.024 0.7 7.4 2832
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 28.228 38482 1926 100 0.203 0.203 0.2 0.2039 0.252 0.249 RANDOM 33.808
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.36 -1.18 -2.36 3.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.832 r_dihedral_angle_4_deg 22.331 r_dihedral_angle_3_deg 16.637 r_scangle_it 6.903 r_dihedral_angle_1_deg 6.685 r_scbond_it 5.699 r_mcangle_it 3.418 r_mcbond_it 2.158 r_angle_refined_deg 1.56 r_angle_other_deg 0.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.832 r_dihedral_angle_4_deg 22.331 r_dihedral_angle_3_deg 16.637 r_scangle_it 6.903 r_dihedral_angle_1_deg 6.685 r_scbond_it 5.699 r_mcangle_it 3.418 r_mcbond_it 2.158 r_angle_refined_deg 1.56 r_angle_other_deg 0.969 r_mcbond_other 0.56 r_symmetry_vdw_other 0.22 r_symmetry_hbond_refined 0.22 r_nbd_refined 0.212 r_nbd_other 0.2 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.161 r_symmetry_vdw_refined 0.152 r_nbtor_other 0.09 r_chiral_restr 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4099 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction autoSHARP phasing