X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4.5298PEG 4000, pH 4.5, vapor diffusion, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.243.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.349α = 90
b = 70.449β = 90
c = 85.1γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-07-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97903SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.995093.20.0711.57.121140
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.992.061000.2716.92231

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT22020721107293.010.1710.1690.212RANDOM12.33
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.62-1.120.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.845
r_dihedral_angle_4_deg21.241
r_dihedral_angle_3_deg13.008
r_dihedral_angle_1_deg6.547
r_scangle_it3.608
r_scbond_it2.47
r_angle_refined_deg1.537
r_mcangle_it1.384
r_mcbond_it1.053
r_angle_other_deg0.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.845
r_dihedral_angle_4_deg21.241
r_dihedral_angle_3_deg13.008
r_dihedral_angle_1_deg6.547
r_scangle_it3.608
r_scbond_it2.47
r_angle_refined_deg1.537
r_mcangle_it1.384
r_mcbond_it1.053
r_angle_other_deg0.94
r_symmetry_hbond_refined0.398
r_mcbond_other0.348
r_xyhbond_nbd_refined0.261
r_symmetry_vdw_other0.237
r_nbd_refined0.204
r_nbd_other0.2
r_nbtor_refined0.176
r_symmetry_vdw_refined0.167
r_chiral_restr0.094
r_nbtor_other0.085
r_xyhbond_nbd_other0.043
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2117
Nucleic Acid Atoms
Solvent Atoms301
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection