☰ Navigation Tabs
Crystal structure analysis of anti-HIV-1 V3-Fab F425-B4e8 in complex with a V3-peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 298 PEG 8000, pH 6.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.14 60.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.912 α = 90 b = 39.858 β = 108.5 c = 97.96 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Rh coated flat mirror 2007-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99 0.102 12.6 3.7 15169 -3 60.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 94.6 0.476 2.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 50 15169 755 98.85 0.222 0.219 0.2225 0.264 0.2747 RANDOM 49.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 1.78 3.43 -1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.385 r_dihedral_angle_3_deg 14.64 r_dihedral_angle_4_deg 10.55 r_dihedral_angle_1_deg 5.25 r_angle_refined_deg 0.946 r_scangle_it 0.82 r_scbond_it 0.435 r_nbtor_refined 0.298 r_mcangle_it 0.267 r_symmetry_vdw_refined 0.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.385 r_dihedral_angle_3_deg 14.64 r_dihedral_angle_4_deg 10.55 r_dihedral_angle_1_deg 5.25 r_angle_refined_deg 0.946 r_scangle_it 0.82 r_scbond_it 0.435 r_nbtor_refined 0.298 r_mcangle_it 0.267 r_symmetry_vdw_refined 0.196 r_nbd_refined 0.172 r_mcbond_it 0.147 r_xyhbond_nbd_refined 0.106 r_metal_ion_refined 0.067 r_chiral_restr 0.06 r_symmetry_hbond_refined 0.028 r_bond_refined_d 0.005 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3353 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing