☰ Navigation Tabs
Crystal structure of the N-terminal signal receiver domain of two-component system response regulator from Bacteroides fragilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 2.8M Sodium acetate, pH 7.0, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.13 42.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.044 α = 90 b = 56.044 β = 90 c = 73.622 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.535 99.4 0.081 0.081 19 7.1 12820 12743 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.433 0.433 4.2 7.2 1825
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 20 12823 12730 616 99.27 0.204 0.202 0.234 0.2447 RANDOM 24.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.3 0.59 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.932 r_dihedral_angle_4_deg 14.628 r_dihedral_angle_3_deg 13.828 r_dihedral_angle_1_deg 5.608 r_scangle_it 4.39 r_scbond_it 2.693 r_mcangle_it 1.904 r_angle_refined_deg 1.545 r_mcbond_it 1.055 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.932 r_dihedral_angle_4_deg 14.628 r_dihedral_angle_3_deg 13.828 r_dihedral_angle_1_deg 5.608 r_scangle_it 4.39 r_scbond_it 2.693 r_mcangle_it 1.904 r_angle_refined_deg 1.545 r_mcbond_it 1.055 r_nbtor_refined 0.308 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.19 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.113 r_xyhbond_nbd_refined 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 951 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building