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Toxoplasma gondii apicoplast-targeted acyl carrier protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FAE PDB entry 2FAE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 30% PEG 1500, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.53 51.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.814 α = 90 b = 38.814 β = 90 c = 104.617 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54180
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.7 0.062 37.15 9.6 7707 7707
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 97.6 0.297 5.5 5.8 745
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2FAE 1.9 34.88 7313 7313 354 99.71 0.17449 0.17449 0.1717 0.1705 0.23 0.2273 RANDOM 25.207
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.33 0.65 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.317 r_dihedral_angle_4_deg 18.777 r_dihedral_angle_3_deg 15.215 r_dihedral_angle_1_deg 4.821 r_scangle_it 4.715 r_scbond_it 2.842 r_mcangle_it 1.674 r_angle_refined_deg 1.546 r_mcbond_it 0.967 r_metal_ion_refined 0.406
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.317 r_dihedral_angle_4_deg 18.777 r_dihedral_angle_3_deg 15.215 r_dihedral_angle_1_deg 4.821 r_scangle_it 4.715 r_scbond_it 2.842 r_mcangle_it 1.674 r_angle_refined_deg 1.546 r_mcbond_it 0.967 r_metal_ion_refined 0.406 r_symmetry_vdw_refined 0.329 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.254 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.097 r_symmetry_metal_ion_refined 0.066 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 621 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection d*TREK data reduction d*TREK data scaling MOLREP phasing