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Crystal structure of PA0076 from Pseudomonas aeruginosa PAO1 at 2.05 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.1M Sodium cacodylate, 0.2M Calcium acetate, 18% PEG 8000, 0.3M NDSB 256, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 1.99 38.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.257 α = 90 b = 125.407 β = 90 c = 49.876 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2007-02-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 46.32 99.4 0.19 0.19 17.357 9.6 23865 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.1 100 0.747 0.747 3.2 9.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 46.32 23865 1226 0.186 0.183 0.2131 0.234 0.2544 RANDOM 39.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.7 -1.86 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.472 r_dihedral_angle_4_deg 16.658 r_dihedral_angle_3_deg 15.642 r_dihedral_angle_1_deg 6.742 r_scangle_it 4 r_scbond_it 2.757 r_angle_refined_deg 1.773 r_mcangle_it 1.681 r_mcbond_it 1.448 r_angle_other_deg 0.906
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.472 r_dihedral_angle_4_deg 16.658 r_dihedral_angle_3_deg 15.642 r_dihedral_angle_1_deg 6.742 r_scangle_it 4 r_scbond_it 2.757 r_angle_refined_deg 1.773 r_mcangle_it 1.681 r_mcbond_it 1.448 r_angle_other_deg 0.906 r_mcbond_other 0.303 r_symmetry_vdw_other 0.236 r_nbd_refined 0.209 r_nbd_other 0.192 r_nbtor_refined 0.187 r_symmetry_vdw_refined 0.166 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.105 r_nbtor_other 0.091 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3232 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 22
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data reduction HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing RESOLVE model building Coot model building ARP/wARP model building REFMAC refinement ADSC data collection HKL-3000 data scaling DM phasing RESOLVE phasing