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Kinase and Ubiquitin-associated domains of MARK3/Par-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZMU PDB entry 1ZMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1.5M LiSO4, 100 mM HEPES pH7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.74 55.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.675 α = 90 b = 112.544 β = 90 c = 117.206 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2005-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97899 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 30 99.4 0.059 13.6 6.4 23737 23590
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.8 95.5 0.395 3.3 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1ZMU 2.7 30 23590 22204 1209 99.94 0.21859 0.21543 0.222 0.27926 0.2821 RANDOM 34.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.56 0.31 -2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.441 r_dihedral_angle_3_deg 20.696 r_dihedral_angle_4_deg 15.532 r_dihedral_angle_1_deg 6.356 r_scangle_it 2.609 r_angle_refined_deg 1.646 r_scbond_it 1.64 r_mcangle_it 1.041 r_mcbond_it 0.638 r_symmetry_hbond_refined 0.437
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.441 r_dihedral_angle_3_deg 20.696 r_dihedral_angle_4_deg 15.532 r_dihedral_angle_1_deg 6.356 r_scangle_it 2.609 r_angle_refined_deg 1.646 r_scbond_it 1.64 r_mcangle_it 1.041 r_mcbond_it 0.638 r_symmetry_hbond_refined 0.437 r_symmetry_vdw_refined 0.367 r_nbtor_refined 0.32 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5028 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection DENZO data reduction SCALEPACK data scaling